STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN06938.1Hypothetical protein. (120 aa)    
Predicted Functional Partners:
KRN06939.1
Hypothetical protein.
 
     0.942
KRN06151.1
Hypothetical protein.
  
     0.638
KRN05786.1
MarR family transcriptional regulator.
  
     0.623
KRN06937.1
DNA RNA helicase.
       0.613
KRN06936.1
7,8-dihydro-8-oxoguanine-triphosphatase.
       0.610
KRN07232.1
Hypothetical protein.
  
     0.581
KRN06191.1
Hypothetical protein.
  
     0.496
KRN05398.1
Hypothetical protein.
  
     0.457
KRN06137.1
Hypothetical protein.
  
     0.438
KRN06940.1
Uracil DNA glycosylase.
       0.425
Your Current Organism:
Lactobacillus sucicola
NCBI taxonomy Id: 1423806
Other names: L. sucicola DSM 21376 = JCM 15457, Lactobacillus sucicola DSM 21376, Lactobacillus sucicola DSM 21376 = JCM 15457, Lactobacillus sucicola JCM 15457, Lactobacillus sucicola JCM 15457 = DSM 21376
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.