STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN07518.1Hypothetical protein. (285 aa)    
Predicted Functional Partners:
KRN07519.1
PadR-like family regulator protein.
 
  
 0.881
KRN05328.1
Hypothetical protein.
  
     0.614
KRN07469.1
ABC transporter, permease.
  
     0.612
KRN06901.1
Permease of the major facilitator superfamily protein.
  
     0.588
KRN06904.1
Hypothetical protein.
  
     0.584
KRN05320.1
Hypothetical protein.
  
     0.579
KRN06962.1
Hypothetical protein.
  
     0.535
KRN06641.1
Hypothetical protein.
  
     0.529
KRN06100.1
Hypothetical protein.
  
     0.524
KRN06559.1
Hypothetical protein.
  
     0.502
Your Current Organism:
Lactobacillus sucicola
NCBI taxonomy Id: 1423806
Other names: L. sucicola DSM 21376 = JCM 15457, Lactobacillus sucicola DSM 21376, Lactobacillus sucicola DSM 21376 = JCM 15457, Lactobacillus sucicola JCM 15457, Lactobacillus sucicola JCM 15457 = DSM 21376
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.