STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN06441.1Hypothetical protein. (106 aa)    
Predicted Functional Partners:
KRN06440.1
ComG operon protein 2.
 
  
 0.987
KRN06442.1
Hypothetical protein.
  
 
 0.986
KRN06439.1
Competence protein ComGA.
  
  
 0.983
KRN06446.1
Adenine-specific DNA methylase.
 
     0.756
KRN05293.1
ComE operon protein 3.
   
  
 0.742
KRN06443.1
Hypothetical protein.
       0.727
KRN05959.1
ComF operon protein 1.
  
  
 0.691
KRN06444.1
Hypothetical protein.
       0.672
KRN06445.1
Hypothetical protein.
       0.672
KRN05740.1
Hypothetical protein.
  
  
 0.629
Your Current Organism:
Lactobacillus sucicola
NCBI taxonomy Id: 1423806
Other names: L. sucicola DSM 21376 = JCM 15457, Lactobacillus sucicola DSM 21376, Lactobacillus sucicola DSM 21376 = JCM 15457, Lactobacillus sucicola JCM 15457, Lactobacillus sucicola JCM 15457 = DSM 21376
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.