STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN06293.1XRE family transcriptional regulator. (279 aa)    
Predicted Functional Partners:
KRN06292.1
Hypothetical protein.
 
    0.924
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
    
 0.742
KRN06659.1
Hypothetical protein.
  
     0.569
KRN05678.1
Glycerophosphoryl diester phosphodiesterase.
  
     0.569
KRN05700.1
ABC superfamily ATP binding cassette transporter, membrane protein.
  
     0.555
KRN06294.1
Hypothetical protein.
       0.515
KRN06295.1
Hypothetical protein.
       0.515
KRN06662.1
Metallophosphoesterase.
  
     0.482
KRN05654.1
Integral membrane protein.
  
     0.477
KRN05622.1
Galactose-1-phosphate uridylyltransferase.
  
  
  0.475
Your Current Organism:
Lactobacillus sucicola
NCBI taxonomy Id: 1423806
Other names: L. sucicola DSM 21376 = JCM 15457, Lactobacillus sucicola DSM 21376, Lactobacillus sucicola DSM 21376 = JCM 15457, Lactobacillus sucicola JCM 15457, Lactobacillus sucicola JCM 15457 = DSM 21376
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.