STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM09639.1Superfamily I DNA RNA helicase-like protein. (764 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.892
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.886
KRM13318.1
ATP-dependent DNA helicase Rep.
    
 0.859
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
   0.858
rpoE
DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
 
 
 0.855
rpoZ
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.835
KRM12530.1
Hypothetical protein.
    
   0.736
KRM13553.1
Hypothetical protein.
  
     0.657
KRM09640.1
Phosphoglycerol transferase.
 
     0.656
addA
ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.
 
  
  0.498
Your Current Organism:
Lactobacillus suebicus
NCBI taxonomy Id: 1423807
Other names: L. suebicus DSM 5007 = KCTC 3549, Lactobacillus suebicus DSM 5007, Lactobacillus suebicus DSM 5007 = KCTC 3549, Lactobacillus suebicus KCTC 3549, Lactobacillus suebicus KCTC 3549 = DSM 5007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.