STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM12838.1Signal transduction diguanylate cyclase. (389 aa)    
Predicted Functional Partners:
KRM12815.1
C-di-GMP-specific phosphodiesterase.
 
  0.814
KRM11428.1
C-di-GMP-specific phosphodiesterase.
 
 
  0.786
KRM12256.1
C-di-GMP-specific phosphodiesterase.
 
 
  0.774
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.773
KRM11991.1
C-di-GMP-specific phosphodiesterase.
 
 
  0.770
KRM09898.1
3,4-dihydroxy-2-butanone 4-phosphate synthase GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. Belongs to the DHBP synthase family.
    
  0.758
ribA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
    
  0.758
KRM12292.1
C-di-GMP-specific phosphodiesterase.
 
 
  0.751
KRM11669.1
Hypothetical protein.
 
 
  0.719
KRM10501.1
C-di-GMP-specific phosphodiesterase.
 
 
  0.706
Your Current Organism:
Lactobacillus suebicus
NCBI taxonomy Id: 1423807
Other names: L. suebicus DSM 5007 = KCTC 3549, Lactobacillus suebicus DSM 5007, Lactobacillus suebicus DSM 5007 = KCTC 3549, Lactobacillus suebicus KCTC 3549, Lactobacillus suebicus KCTC 3549 = DSM 5007
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