Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRM11191.1 | KRM12308.1 | FD16_GL001007 | FD16_GL002493 | Glycerophosphoryl diester phosphodiesterase. | D-alanyl transfer protein DltD. | 0.573 |
KRM11191.1 | KRM12626.1 | FD16_GL001007 | FD16_GL002140 | Glycerophosphoryl diester phosphodiesterase. | Hypothetical protein. | 0.491 |
KRM11191.1 | dltA | FD16_GL001007 | FD16_GL002490 | Glycerophosphoryl diester phosphodiesterase. | D-alanine-activating enzyme; Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D- alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. Belongs to the ATP-dependent AMP [...] | 0.402 |
KRM11191.1 | dltC | FD16_GL001007 | FD16_GL002492 | Glycerophosphoryl diester phosphodiesterase. | D-alanine--poly(phosphoribitol) ligase subunit 2; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. | 0.565 |
KRM12306.1 | KRM12308.1 | FD16_GL002491 | FD16_GL002493 | D-alanyl transfer protein; Could be involved in the transport of activated D-alanine through the membrane. | D-alanyl transfer protein DltD. | 0.999 |
KRM12306.1 | KRM12309.1 | FD16_GL002491 | FD16_GL002494 | D-alanyl transfer protein; Could be involved in the transport of activated D-alanine through the membrane. | Beta-lactamase class C related penicillin binding protein. | 0.976 |
KRM12306.1 | KRM12310.1 | FD16_GL002491 | FD16_GL002495 | D-alanyl transfer protein; Could be involved in the transport of activated D-alanine through the membrane. | Cellobiose PTS, EIIC. | 0.669 |
KRM12306.1 | KRM12311.1 | FD16_GL002491 | FD16_GL002496 | D-alanyl transfer protein; Could be involved in the transport of activated D-alanine through the membrane. | Alpha beta hydrolase. | 0.839 |
KRM12306.1 | KRM12626.1 | FD16_GL002491 | FD16_GL002140 | D-alanyl transfer protein; Could be involved in the transport of activated D-alanine through the membrane. | Hypothetical protein. | 0.943 |
KRM12306.1 | acpP | FD16_GL002491 | FD16_GL001291 | D-alanyl transfer protein; Could be involved in the transport of activated D-alanine through the membrane. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.917 |
KRM12306.1 | acpP-2 | FD16_GL002491 | FD16_GL001508 | D-alanyl transfer protein; Could be involved in the transport of activated D-alanine through the membrane. | Hypothetical protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.917 |
KRM12306.1 | dltA | FD16_GL002491 | FD16_GL002490 | D-alanyl transfer protein; Could be involved in the transport of activated D-alanine through the membrane. | D-alanine-activating enzyme; Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D- alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. Belongs to the ATP-dependent AMP [...] | 0.999 |
KRM12306.1 | dltC | FD16_GL002491 | FD16_GL002492 | D-alanyl transfer protein; Could be involved in the transport of activated D-alanine through the membrane. | D-alanine--poly(phosphoribitol) ligase subunit 2; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. | 0.999 |
KRM12308.1 | KRM11191.1 | FD16_GL002493 | FD16_GL001007 | D-alanyl transfer protein DltD. | Glycerophosphoryl diester phosphodiesterase. | 0.573 |
KRM12308.1 | KRM12306.1 | FD16_GL002493 | FD16_GL002491 | D-alanyl transfer protein DltD. | D-alanyl transfer protein; Could be involved in the transport of activated D-alanine through the membrane. | 0.999 |
KRM12308.1 | KRM12309.1 | FD16_GL002493 | FD16_GL002494 | D-alanyl transfer protein DltD. | Beta-lactamase class C related penicillin binding protein. | 0.972 |
KRM12308.1 | KRM12310.1 | FD16_GL002493 | FD16_GL002495 | D-alanyl transfer protein DltD. | Cellobiose PTS, EIIC. | 0.691 |
KRM12308.1 | KRM12311.1 | FD16_GL002493 | FD16_GL002496 | D-alanyl transfer protein DltD. | Alpha beta hydrolase. | 0.873 |
KRM12308.1 | KRM12626.1 | FD16_GL002493 | FD16_GL002140 | D-alanyl transfer protein DltD. | Hypothetical protein. | 0.676 |
KRM12308.1 | acpP | FD16_GL002493 | FD16_GL001291 | D-alanyl transfer protein DltD. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.676 |
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