STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM99840.1Peptidase, S54 (rhomboid) family protein. (208 aa)    
Predicted Functional Partners:
KRM99841.1
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.868
KRM99839.1
Hypothetical protein.
 
     0.849
KRM97862.1
Membrane protease family stomatin prohibitin-like protein.
   
 0.822
KRM99838.1
Rhodanese family protein.
  
  
 0.794
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 
 0.644
rpmG-2
Hypothetical protein; Belongs to the bacterial ribosomal protein bL33 family.
       0.610
KRM99843.1
Cell division protein FtsI penicillin-binding protein 2.
     
 0.524
Your Current Organism:
Lactobacillus taiwanensis
NCBI taxonomy Id: 1423809
Other names: L. taiwanensis DSM 21401, Lactobacillus taiwanensis DSM 21401
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.