Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KRM86611.1 | KRM87836.1 | FD19_GL001802 | FD19_GL000113 | Excinuclease ATPase subunit. | Superfamily I DNA and RNA helicase. | 0.654 |
| KRM86611.1 | KRM88173.1 | FD19_GL001802 | FD19_GL000463 | Excinuclease ATPase subunit. | Single-stranded DNA-specific exonuclease. | 0.523 |
| KRM86611.1 | polA | FD19_GL001802 | FD19_GL000618 | Excinuclease ATPase subunit. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.670 |
| KRM86611.1 | uvrA | FD19_GL001802 | FD19_GL000711 | Excinuclease ATPase subunit. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.944 |
| KRM86611.1 | uvrB | FD19_GL001802 | FD19_GL000712 | Excinuclease ATPase subunit. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.996 |
| KRM86611.1 | uvrC | FD19_GL001802 | FD19_GL000309 | Excinuclease ATPase subunit. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.782 |
| KRM87836.1 | KRM86611.1 | FD19_GL000113 | FD19_GL001802 | Superfamily I DNA and RNA helicase. | Excinuclease ATPase subunit. | 0.654 |
| KRM87836.1 | KRM88173.1 | FD19_GL000113 | FD19_GL000463 | Superfamily I DNA and RNA helicase. | Single-stranded DNA-specific exonuclease. | 0.645 |
| KRM87836.1 | dinG | FD19_GL000113 | FD19_GL000405 | Superfamily I DNA and RNA helicase. | DNA polymerase III Rad3-related DNA helicase; 3'-5' exonuclease. | 0.879 |
| KRM87836.1 | polA | FD19_GL000113 | FD19_GL000618 | Superfamily I DNA and RNA helicase. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.973 |
| KRM87836.1 | uvrA | FD19_GL000113 | FD19_GL000711 | Superfamily I DNA and RNA helicase. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.654 |
| KRM87836.1 | uvrB | FD19_GL000113 | FD19_GL000712 | Superfamily I DNA and RNA helicase. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.969 |
| KRM87836.1 | uvrC | FD19_GL000113 | FD19_GL000309 | Superfamily I DNA and RNA helicase. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.723 |
| KRM88173.1 | KRM86611.1 | FD19_GL000463 | FD19_GL001802 | Single-stranded DNA-specific exonuclease. | Excinuclease ATPase subunit. | 0.523 |
| KRM88173.1 | KRM87836.1 | FD19_GL000463 | FD19_GL000113 | Single-stranded DNA-specific exonuclease. | Superfamily I DNA and RNA helicase. | 0.645 |
| KRM88173.1 | dinG | FD19_GL000463 | FD19_GL000405 | Single-stranded DNA-specific exonuclease. | DNA polymerase III Rad3-related DNA helicase; 3'-5' exonuclease. | 0.711 |
| KRM88173.1 | mutM | FD19_GL000463 | FD19_GL000617 | Single-stranded DNA-specific exonuclease. | DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.554 |
| KRM88173.1 | obg | FD19_GL000463 | FD19_GL000310 | Single-stranded DNA-specific exonuclease. | GTPase ObgE; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.507 |
| KRM88173.1 | polA | FD19_GL000463 | FD19_GL000618 | Single-stranded DNA-specific exonuclease. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.801 |
| KRM88173.1 | uvrA | FD19_GL000463 | FD19_GL000711 | Single-stranded DNA-specific exonuclease. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.523 |
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