STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM88123.1Membrane protein. (321 aa)    
Predicted Functional Partners:
KRM87266.1
Peptide ABC transporter ATPase.
 
 0.989
KRM87854.1
ABC transporter, ATP-binding protein.
  
 0.917
KRM87484.1
Peptide ABC transporter ATPase.
  
 0.917
KRM87560.1
ABC transporter ATPase.
  
 0.917
KRM87205.1
ABC superfamily ATP binding cassette transporter, ABC protein.
  
 0.917
KRM86933.1
Conjugative transposon protein.
  
 0.917
KRM88124.1
SAM-dependent methyltransferase.
 
     0.784
KRM88122.1
Hypothetical protein.
       0.777
KRM88097.1
Hypothetical protein.
  
     0.759
KRM86563.1
Hypothetical protein.
  
     0.757
Your Current Organism:
Lactobacillus thailandensis
NCBI taxonomy Id: 1423810
Other names: L. thailandensis DSM 22698 = JCM 13996, Lactobacillus thailandensis DSM 22698, Lactobacillus thailandensis DSM 22698 = JCM 13996, Lactobacillus thailandensis JCM 13996, Lactobacillus thailandensis JCM 13996 = DSM 22698
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