STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM88395.1Hypothetical protein. (223 aa)    
Predicted Functional Partners:
rnr
Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.883
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
     
 0.718
KRM88396.1
Hypothetical protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
    0.681
KRM87965.1
Hypothetical protein; Belongs to the UPF0342 family.
  
     0.542
mecA
Adaptor protein; Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis.
  
     0.514
KRM88413.1
Integral membrane protein.
  
     0.487
KRM87339.1
Hypothetical protein.
  
     0.452
KRM87972.1
ABC transporter permease.
  
    0.431
KRM88300.1
Metal-binding, possibly nucleic acid-binding protein.
  
     0.408
KRM87877.1
Xre family transcriptional regulator.
  
     0.403
Your Current Organism:
Lactobacillus thailandensis
NCBI taxonomy Id: 1423810
Other names: L. thailandensis DSM 22698 = JCM 13996, Lactobacillus thailandensis DSM 22698, Lactobacillus thailandensis DSM 22698 = JCM 13996, Lactobacillus thailandensis JCM 13996, Lactobacillus thailandensis JCM 13996 = DSM 22698
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.