STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL35659.1Aminotransferase. (405 aa)    
Predicted Functional Partners:
KRL38685.1
Aspartate kinase I; Belongs to the aspartokinase family.
   
 
 0.521
KRL37919.1
Aspartate kinase; Belongs to the aspartokinase family.
   
 
 0.521
KRL38684.1
Asparagine synthase.
   
 
 0.520
KRL35660.1
Hypothetical protein.
  
    0.507
KRL37849.1
Aspartate ammonia-lyase.
     
  0.499
hisC
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
 
  0.415
KRL38437.1
Hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
   
    0.414
KRL37618.1
Macrolide-efflux protein.
   
 
 0.406
hisC-2
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
 
  0.402
Your Current Organism:
Lactobacillus uvarum
NCBI taxonomy Id: 1423812
Other names: L. uvarum DSM 19971, Lactobacillus sp. 8, Lactobacillus uvarum DSM 19971
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