KRL38401.1 protein (Lactobacillus uvarum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRL38401.1

Abc-type cobalt transport system atpase component. (234 aa)

Predicted Functional Partners:

KRL37879.1

0.896

KRL38402.1

0.732

KRL36655.1

0.722

KRL37878.1

0.609

KRL38292.1

0.587

KRL37502.1

0.586

atpD

0.568

KRL36799.1

0.564

KRL38303.1

0.562

atpA

0.552

Your Current Organism:

Lactobacillus uvarum

NCBI taxonomy Id: 1423812
Other names: L. uvarum DSM 19971, Lactobacillus sp. 8, Lactobacillus uvarum DSM 19971

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRL36655.1	KRL37878.1	FD20_GL001118	FD20_GL002416	XRE-family DNA-binding domain-containing protein.	ABC transporter-like protein.	0.911
KRL36655.1	KRL38401.1	FD20_GL001118	FD20_GL001601	XRE-family DNA-binding domain-containing protein.	Abc-type cobalt transport system atpase component.	0.722
KRL36799.1	KRL38292.1	FD20_GL001020	FD20_GL001909	Hypothetical protein.	Hypothetical protein.	0.596
KRL36799.1	KRL38303.1	FD20_GL001020	FD20_GL001920	Hypothetical protein.	Hypothetical protein.	0.610
KRL36799.1	KRL38401.1	FD20_GL001020	FD20_GL001601	Hypothetical protein.	Abc-type cobalt transport system atpase component.	0.564
KRL37502.1	KRL38401.1	FD20_GL000380	FD20_GL001601	ABC transporter ATP-binding protein.	Abc-type cobalt transport system atpase component.	0.586
KRL37878.1	KRL36655.1	FD20_GL002416	FD20_GL001118	ABC transporter-like protein.	XRE-family DNA-binding domain-containing protein.	0.911
KRL37878.1	KRL37879.1	FD20_GL002416	FD20_GL002417	ABC transporter-like protein.	Hypothetical protein.	0.991
KRL37878.1	KRL38401.1	FD20_GL002416	FD20_GL001601	ABC transporter-like protein.	Abc-type cobalt transport system atpase component.	0.609
KRL37878.1	atpA	FD20_GL002416	FD20_GL000173	ABC transporter-like protein.	F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.552
KRL37878.1	atpD	FD20_GL002416	FD20_GL000171	ABC transporter-like protein.	F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.568
KRL37879.1	KRL37878.1	FD20_GL002417	FD20_GL002416	Hypothetical protein.	ABC transporter-like protein.	0.991
KRL37879.1	KRL38401.1	FD20_GL002417	FD20_GL001601	Hypothetical protein.	Abc-type cobalt transport system atpase component.	0.896
KRL38292.1	KRL36799.1	FD20_GL001909	FD20_GL001020	Hypothetical protein.	Hypothetical protein.	0.596
KRL38292.1	KRL38303.1	FD20_GL001909	FD20_GL001920	Hypothetical protein.	Hypothetical protein.	0.490
KRL38292.1	KRL38401.1	FD20_GL001909	FD20_GL001601	Hypothetical protein.	Abc-type cobalt transport system atpase component.	0.587
KRL38303.1	KRL36799.1	FD20_GL001920	FD20_GL001020	Hypothetical protein.	Hypothetical protein.	0.610
KRL38303.1	KRL38292.1	FD20_GL001920	FD20_GL001909	Hypothetical protein.	Hypothetical protein.	0.490
KRL38303.1	KRL38401.1	FD20_GL001920	FD20_GL001601	Hypothetical protein.	Abc-type cobalt transport system atpase component.	0.562
KRL38401.1	KRL36655.1	FD20_GL001601	FD20_GL001118	Abc-type cobalt transport system atpase component.	XRE-family DNA-binding domain-containing protein.	0.722