STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL34267.1L-cystine ABC superfamily ATP binding cassette transporter, binding protein YckK; Belongs to the bacterial solute-binding protein 3 family. (269 aa)    
Predicted Functional Partners:
KRL34269.1
Amino acid ABC transporter, permease.
  0.998
KRL34268.1
ABC superfamily ATP binding cassette transporter, ABC protein.
 
  0.995
KRL35345.1
Transporter subunit membrane component of ABC superfamily.
  0.979
KRL38129.1
Hypothetical protein.
 0.970
KRL38155.1
Polar amino acid ABC transporter inner membrane subunit.
 0.964
KRL39083.1
Polar amino acid ABC transporter permease.
 
  0.939
KRL39000.1
Hypothetical protein.
  0.903
KRL32644.1
Hypothetical protein.
  
  0.888
KRL36039.1
ABC-type amino acid transport system, pemease component.
 0.862
KRL38992.1
Amino acid ABC transporter permease.
  0.816
Your Current Organism:
Lactobacillus uvarum
NCBI taxonomy Id: 1423812
Other names: L. uvarum DSM 19971, Lactobacillus sp. 8, Lactobacillus uvarum DSM 19971
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