STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL33545.1Rrf2 family transcriptional regulator. (167 aa)    
Predicted Functional Partners:
KRL33546.1
Hypothetical protein.
       0.736
KRL39095.1
Cysteine desulfurase.
  
 
 0.675
KRL38707.1
Cysteine desulfurase selenocysteine lyase.
  
 
 0.675
KRL37925.1
Cysteine desulfurase.
  
 
 0.675
KRL38721.1
Hypothetical protein; Belongs to the UPF0358 family.
  
     0.623
KRL39114.1
Hypothetical protein.
  
  
 0.621
KRL37426.1
Hypothetical protein.
 
    0.562
KRL33544.1
Acetolactate synthase; Belongs to the TPP enzyme family.
 
     0.513
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
     
 0.503
KRL37566.1
Flagellar motor switch protein G.
    
   0.489
Your Current Organism:
Lactobacillus uvarum
NCBI taxonomy Id: 1423812
Other names: L. uvarum DSM 19971, Lactobacillus sp. 8, Lactobacillus uvarum DSM 19971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.