STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM60779.1Signal transduction diguanylate cyclase. (596 aa)    
Predicted Functional Partners:
KRM60780.1
Hypothetical protein.
       0.773
KRM60326.1
Hypothetical protein.
 
 
0.684
KRM62407.1
C-di-GMP-specific phosphodiesterase.
  
     0.588
KRM60718.1
Signal transduction diguanylate cyclase.
 
 
0.561
KRM61118.1
Hypothetical protein.
 
 
 
0.468
KRM61067.1
Diguanylate cyclase phosphodiesterase domain-containing protein.
 
 
 
0.467
KRM60959.1
Signal transduction diguanylate cyclase.
 
 
 
0.464
KRM60875.1
Signal transduction diguanylate cyclase.
 
 
 
0.460
KRM61093.1
Signal transduction diguanylate cyclase.
 
 
 
0.459
KRM61629.1
Diguanylate cyclase phosphodiesterase domain-containing protein.
 
 
 
0.456
Your Current Organism:
Lactobacillus vaccinostercus
NCBI taxonomy Id: 1423813
Other names: L. vaccinostercus DSM 20634, Lactobacillus vaccinostercus DSM 20634
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.