STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ41429.1Hypothetical protein. (281 aa)    
Predicted Functional Partners:
EEJ41428.1
Tape measure domain protein; COG: COG3953.
 
     0.949
EEJ41430.1
NlpC/P60 family protein; COG: COG0791.
 
     0.946
EEJ41425.1
Phage major tail protein.
 
     0.859
EEJ41424.1
Hypothetical protein.
 
     0.857
EEJ41433.1
Hypothetical protein.
  
    0.841
EEJ41450.1
Putative phage terminase, large subunit.
 
     0.828
EEJ41456.1
Hypothetical protein.
 
     0.816
EEJ41452.1
Phage portal protein, HK97 family.
 
     0.810
EEJ41449.1
Phage terminase, small subunit, P27 family.
 
     0.808
EEJ41453.1
Phage prohead protease, HK97 family; COG: COG3740.
 
     0.807
Your Current Organism:
Lactobacillus vaginalis
NCBI taxonomy Id: 1423814
Other names: L. vaginalis DSM 5837 = ATCC 49540, Lactobacillus vaginalis ATCC 49540, Lactobacillus vaginalis ATCC 49540 = DSM 5837, Lactobacillus vaginalis DSM 5837, Lactobacillus vaginalis DSM 5837 = ATCC 49540
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