STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ41353.1Hypothetical protein; COG: COG3480. (349 aa)    
Predicted Functional Partners:
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
  
 0.955
comEA
ComE operon protein 1; COG: COG1555.
     0.883
EEJ41349.1
Cell cycle protein, FtsW/RodA/SpoVE family; COG: COG0772; Belongs to the SEDS family.
       0.863
EEJ41350.1
Hypothetical protein.
       0.863
rsmD
RNA methyltransferase, RsmD family; COG: COG0742.
       0.863
typA
GTP-binding protein TypA; COG: COG1217.
       0.700
EEJ41356.1
DNA internalization competence protein ComEC/Rec2-like protein; COG: COG2333.
       0.610
holA
DNA polymerase III, delta subunit; COG: COG1466.
       0.606
EEJ40844.1
Metallopeptidase, SprT family; COG: COG3091.
 
     0.522
EEJ41355.1
ComE operon protein 2; COG: COG2131.
       0.516
Your Current Organism:
Lactobacillus vaginalis
NCBI taxonomy Id: 1423814
Other names: L. vaginalis DSM 5837 = ATCC 49540, Lactobacillus vaginalis ATCC 49540, Lactobacillus vaginalis ATCC 49540 = DSM 5837, Lactobacillus vaginalis DSM 5837, Lactobacillus vaginalis DSM 5837 = ATCC 49540
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