STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytSLytS/YhcK-type transmembrane receptor domain protein; COG: COG3275. (582 aa)    
Predicted Functional Partners:
EEJ41261.1
LytTr DNA-binding domain protein; COG: COG3279.
 0.999
EEJ40789.1
Response regulator receiver domain protein; COG: COG3279.
  
 0.824
EEJ41262.1
LrgA family protein.
 
   
 0.793
EEJ41263.1
Sodium pump decarboxylase, gamma subunit; COG: COG1346.
 
   
 0.725
EEJ41259.1
SPFH/Band 7/PHB domain protein.
       0.646
EEJ41258.1
NOL1/NOP2/sun family protein; COG: COG0144.
       0.633
EEJ41509.1
AraC-like ligand binding domain protein.
    
  0.514
EEJ41257.1
Cof-like hydrolase; COG: COG0561.
       0.424
Your Current Organism:
Lactobacillus vaginalis
NCBI taxonomy Id: 1423814
Other names: L. vaginalis DSM 5837 = ATCC 49540, Lactobacillus vaginalis ATCC 49540, Lactobacillus vaginalis ATCC 49540 = DSM 5837, Lactobacillus vaginalis DSM 5837, Lactobacillus vaginalis DSM 5837 = ATCC 49540
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