STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ41192.1ABC transporter, substrate-binding protein; COG: COG0803. (304 aa)    
Predicted Functional Partners:
EEJ41194.1
ABC 3 transport family protein.
 
 
 0.995
EEJ41193.1
ABC transporter, ATP-binding protein; COG: COG1121.
 
 
 0.993
EEJ40148.1
Iron dependent repressor DNA binding domain protein; COG: COG1321.
  
 
 0.902
rpmB
Ribosomal protein L28; COG: COG0227; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.557
EEJ40475.1
Hypothetical protein; COG: COG0340; 6.3.4.15.
       0.509
rpsN
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.499
rpsN-2
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.499
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
  
    0.439
EEJ41190.1
Dinuclear metal center protein, YbgI family; COG: COG0327.
     
 0.433
EEJ41189.1
Hypothetical protein; COG: COG2384.
       0.430
Your Current Organism:
Lactobacillus vaginalis
NCBI taxonomy Id: 1423814
Other names: L. vaginalis DSM 5837 = ATCC 49540, Lactobacillus vaginalis ATCC 49540, Lactobacillus vaginalis ATCC 49540 = DSM 5837, Lactobacillus vaginalis DSM 5837, Lactobacillus vaginalis DSM 5837 = ATCC 49540
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