STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ41075.1HAD hydrolase, family IIB; COG: COG0561. (285 aa)    
Predicted Functional Partners:
EEJ41257.1
Cof-like hydrolase; COG: COG0561.
 
 
 
0.949
ribF
Riboflavin biosynthesis protein RibF; COG: COG0196; Belongs to the ribF family.
   
 0.941
EEJ40642.1
Nitroreductase family protein; COG: COG0778; Belongs to the flavin oxidoreductase frp family.
    
  0.927
EEJ41265.1
HAD hydrolase, TIGR02254 family; COG: COG1011.
    
 0.538
manA
Mannose-6-phosphate isomerase, class I; COG: COG1482; Belongs to the mannose-6-phosphate isomerase type 1 family.
  
 
 0.430
Your Current Organism:
Lactobacillus vaginalis
NCBI taxonomy Id: 1423814
Other names: L. vaginalis DSM 5837 = ATCC 49540, Lactobacillus vaginalis ATCC 49540, Lactobacillus vaginalis ATCC 49540 = DSM 5837, Lactobacillus vaginalis DSM 5837, Lactobacillus vaginalis DSM 5837 = ATCC 49540
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