STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ40729.1NLPA lipoprotein; COG: COG1464; Belongs to the nlpA lipoprotein family. (273 aa)    
Predicted Functional Partners:
metN
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 0.999
EEJ40728.1
ABC transporter, permease protein; COG: COG2011.
 0.999
EEJ39735.1
ABC transporter, substrate-binding protein, family 3; COG: COG0834; Belongs to the bacterial solute-binding protein 3 family.
 
  
 0.905
pstS
Phosphate binding protein; COG: COG0226.
      
 0.720
EEJ40762.1
ABC transporter, substrate-binding protein, family 3; COG: COG0834.
  
  
 0.706
metY
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; COG: COG2873.
  
    0.620
EEJ40339.1
ABC transporter, permease protein; COG: COG1174.
  
 
  0.507
EEJ40341.1
ABC transporter, permease protein; COG: COG1174.
  
 
  0.507
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
  
 0.476
EEJ40941.1
Hypothetical protein; COG: COG0646.
  
  
 0.453
Your Current Organism:
Lactobacillus vaginalis
NCBI taxonomy Id: 1423814
Other names: L. vaginalis DSM 5837 = ATCC 49540, Lactobacillus vaginalis ATCC 49540, Lactobacillus vaginalis ATCC 49540 = DSM 5837, Lactobacillus vaginalis DSM 5837, Lactobacillus vaginalis DSM 5837 = ATCC 49540
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