STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metAPutative homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. (290 aa)    
Predicted Functional Partners:
metY
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; COG: COG2873.
 
 
 0.999
EEJ40640.1
Homoserine dehydrogenase; COG: COG0460.
  
 
 0.989
hom
Homoserine dehydrogenase; COG: COG0460.
  
 
 0.964
yclM
Amino acid kinase family; COG: COG0527; Belongs to the aspartokinase family.
 
 
 0.959
metB1
Cys/Met metabolism PLP-dependent enzyme; COG: COG0626.
  
 
 0.944
metB2
Cys/Met metabolism PLP-dependent enzyme; COG: COG0626.
  
 
 0.944
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
    
 0.938
EEJ40941.1
Hypothetical protein; COG: COG0646.
  
  
 0.903
EEJ40849.1
Cys/Met metabolism PLP-dependent enzyme; COG: COG0626.
  
 
 0.893
metF
Putative methylenetetrahydrofolate reductase (NAD(P)H); COG: COG0685; Belongs to the methylenetetrahydrofolate reductase family.
  
  
 0.772
Your Current Organism:
Lactobacillus vaginalis
NCBI taxonomy Id: 1423814
Other names: L. vaginalis DSM 5837 = ATCC 49540, Lactobacillus vaginalis ATCC 49540, Lactobacillus vaginalis ATCC 49540 = DSM 5837, Lactobacillus vaginalis DSM 5837, Lactobacillus vaginalis DSM 5837 = ATCC 49540
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