STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ40461.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
EEJ41004.1
Hypothetical protein.
 
    0.704
ndk
Nucleoside diphosphate kinase; COG: COG0105; Belongs to the NDK family.
  
  0.674
EEJ41265.1
HAD hydrolase, TIGR02254 family; COG: COG1011.
    
 0.607
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.581
EEJ40999.1
Hypothetical protein.
 
    0.555
EEJ39783.1
Phage protein F-like protein.
  
     0.551
relA
RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
  0.536
pyk
Pyruvate kinase; COG: COG0469; Belongs to the pyruvate kinase family.
   
 
  0.518
EEJ39985.1
FRG domain protein.
 
 
 
 0.517
cinA
Competence/damage-inducible domain protein CinA; COG: COG1058; Belongs to the CinA family.
       0.509
Your Current Organism:
Lactobacillus vaginalis
NCBI taxonomy Id: 1423814
Other names: L. vaginalis DSM 5837 = ATCC 49540, Lactobacillus vaginalis ATCC 49540, Lactobacillus vaginalis ATCC 49540 = DSM 5837, Lactobacillus vaginalis DSM 5837, Lactobacillus vaginalis DSM 5837 = ATCC 49540
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.