STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ40354.1ABC transporter, ATP-binding protein; COG: COG1122. (466 aa)    
Predicted Functional Partners:
EEJ40353.1
Cobalt transport protein.
 
 0.997
EEJ40355.1
Hypothetical protein.
 
  
 0.976
EEJ40138.1
Cobalt transport protein; COG: COG0619.
 0.972
ecfA
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
0.837
EEJ40137.1
ABC transporter, ATP-binding protein; COG: COG1122.
 
 
0.837
EEJ40352.1
Hypothetical protein.
       0.718
EEJ40351.1
Transporter, CPA2 family; COG: COG0025.
       0.621
EEJ40348.1
DNA-binding helix-turn-helix protein.
 
     0.543
EEJ40435.1
Hypothetical protein.
  
     0.522
EEJ40695.1
ABC transporter, ATP-binding protein; COG: COG1132.
   
0.512
Your Current Organism:
Lactobacillus vaginalis
NCBI taxonomy Id: 1423814
Other names: L. vaginalis DSM 5837 = ATCC 49540, Lactobacillus vaginalis ATCC 49540, Lactobacillus vaginalis ATCC 49540 = DSM 5837, Lactobacillus vaginalis DSM 5837, Lactobacillus vaginalis DSM 5837 = ATCC 49540
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.