STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ39961.1Hypothetical protein. (202 aa)    
Predicted Functional Partners:
EEJ41374.1
Hypothetical protein.
  
     0.761
EEJ40541.1
Hypothetical protein; COG: COG4858.
  
     0.743
EEJ40216.1
CAAX amino terminal protease family protein.
  
     0.733
EEJ40373.1
Hypothetical protein.
  
     0.731
EEJ40397.1
Hypothetical protein.
  
     0.719
EEJ40430.1
Hypothetical protein; Similar to lr1824.
  
     0.711
EEJ40159.1
Transcriptional regulator, TetR family.
  
     0.698
EEJ40079.1
Chain length determinant protein; Similar to lr0774.
  
     0.685
EEJ40894.1
Hypothetical protein.
  
     0.681
EEJ40724.1
Hypothetical protein.
  
     0.676
Your Current Organism:
Lactobacillus vaginalis
NCBI taxonomy Id: 1423814
Other names: L. vaginalis DSM 5837 = ATCC 49540, Lactobacillus vaginalis ATCC 49540, Lactobacillus vaginalis ATCC 49540 = DSM 5837, Lactobacillus vaginalis DSM 5837, Lactobacillus vaginalis DSM 5837 = ATCC 49540
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