STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL65893.1Acyltransferase. (399 aa)    
Predicted Functional Partners:
KRL65892.1
AMP-dependent synthetase and ligase.
 
     0.950
KRL65891.1
ABC-type nitrate sulfonate bicarbonate transporter.
 
     0.944
KRL65887.1
acetyl-CoA synthetase.
 
     0.787
KRL65889.1
ABC-type nitrate sulfonate bicarbonate transport system, ATPase component.
 
     0.752
KRL65888.1
ABC transporter permease.
 
     0.695
KRL67055.1
Short-chain alcohol dehydrogenase.
  
     0.661
KRL67936.1
Hypothetical protein.
  
     0.496
KRL66226.1
Hypothetical protein.
  
     0.488
KRL65896.1
GntR family transcriptional regulator.
       0.472
KRL65894.1
Hypothetical protein.
       0.453
Your Current Organism:
Lactobacillus versmoldensis
NCBI taxonomy Id: 1423815
Other names: L. versmoldensis DSM 14857 = KCTC 3814, Lactobacillus versmoldensis DSM 14857, Lactobacillus versmoldensis DSM 14857 = KCTC 3814, Lactobacillus versmoldensis KCTC 3814, Lactobacillus versmoldensis KCTC 3814 = DSM 14857
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.