STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL16500.1NlpC P60 family protein. (1815 aa)    
Predicted Functional Partners:
KRL16505.1
Bacteriophage protein.
 
     0.837
KRL16495.1
Hypothetical protein.
 
     0.821
KRL16488.1
Phage portal protein, SPP1 family.
 
     0.774
KRL16492.1
Hypothetical protein.
 
     0.771
KRL16489.1
Phage Mu protein F like protein.
 
     0.770
KRL16511.1
Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
 
     0.757
KRL16484.1
Prophage terminase small subunit.
 
     0.755
KRL07889.1
Hypothetical protein.
  
     0.747
KRL16501.1
Hypothetical protein.
       0.718
KRL13595.1
Hypothetical protein.
  
     0.704
Your Current Organism:
Lactobacillus zymae
NCBI taxonomy Id: 1423817
Other names: L. zymae DSM 19395, Lactobacillus zymae DSM 19395
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.