STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL10634.1XRE family transcriptional regulator. (285 aa)    
Predicted Functional Partners:
KRL08630.1
Hypothetical protein.
  
    0.713
KRL11169.1
Transcriptional regulator.
  
   0.681
KRL13541.1
Hypothetical protein.
  
     0.650
KRL11294.1
Hypothetical protein.
  
    0.631
KRL12487.1
Hypothetical protein.
  
     0.606
KRL13542.1
Hypothetical protein.
  
     0.603
KRL13685.1
Signal transduction protein.
  
     0.599
KRL12491.1
Hypothetical protein.
  
     0.565
KRL10842.1
NRPS condensation (elongation) domain-containing protein.
  
     0.562
KRL15569.1
Hypothetical protein.
  
     0.553
Your Current Organism:
Lactobacillus zymae
NCBI taxonomy Id: 1423817
Other names: L. zymae DSM 19395, Lactobacillus zymae DSM 19395
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.