STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL09525.1Integrase; Belongs to the 'phage' integrase family. (305 aa)    
Predicted Functional Partners:
KRL11797.1
Site-specific DNA-methyltransferase (adenine-specific), HsdM subunit.
 
  
 0.559
KRL11794.1
Site-specific dna-methyltransferase (adenine-specific), hsdm subunit.
 
  
 0.505
KRL11796.1
Type i site-specific deoxyribonuclease, hsdr subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
   
 0.482
KRL09524.1
Hypothetical protein.
       0.480
KRL15386.1
Amidophosphoribosyltransferase.
  
    0.449
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
  
 0.434
KRL11784.1
Prephenate dehydrogenase.
  
    0.430
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.408
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.408
Your Current Organism:
Lactobacillus zymae
NCBI taxonomy Id: 1423817
Other names: L. zymae DSM 19395, Lactobacillus zymae DSM 19395
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