STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM52740.1Hypothetical protein. (208 aa)    
Predicted Functional Partners:
KRM51885.1
Hypothetical protein.
 
    0.733
KRM53145.1
MarR family transcriptional regulator.
 
     0.722
KRM51890.1
Hypothetical protein.
  
     0.643
KRM52739.1
Hypothetical protein.
       0.560
KRM51906.1
Hypothetical protein.
  
     0.469
KRM51749.1
Hypothetical protein.
  
     0.467
KRM52513.1
Hypothetical protein.
  
     0.463
KRM52630.1
Teichoic acid translocation ATP-binding protein.
 
     0.443
KRM51848.1
Hypothetical protein.
 
    0.428
KRM52095.1
DeoR family transcriptional regulator.
  
     0.405
Your Current Organism:
Lactobacillus aviarius
NCBI taxonomy Id: 1423820
Other names: L. aviarius subsp. araffinosus DSM 20653, Lactobacillus aviarius subsp. araffinosus DSM 20653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.