STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM53298.1Hypothetical protein. (72 aa)    
Predicted Functional Partners:
KRM53297.1
Glucokinase.
  
    0.844
KRM53299.1
Membrane-associated serine protease.
       0.817
KRM53296.1
Rhodanese-like protein.
       0.766
KRM51830.1
Hypothetical protein; Belongs to the UPF0356 family.
  
    0.739
KRM52259.1
Hypothetical protein; Belongs to the UPF0346 family.
  
     0.656
KRM51783.1
Hypothetical protein.
 
    0.565
KRM52268.1
Tetratricopeptide repeat family protein.
 
     0.484
KRM52782.1
Hypothetical protein.
  
     0.456
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
    0.451
Your Current Organism:
Lactobacillus aviarius
NCBI taxonomy Id: 1423820
Other names: L. aviarius subsp. araffinosus DSM 20653, Lactobacillus aviarius subsp. araffinosus DSM 20653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.