STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM34344.1Phenylacetic acid degradation protein. (197 aa)    
Predicted Functional Partners:
SHM34251.1
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
 
   
 0.779
SHK88963.1
Carbonic anhydrase.
    
 0.762
SHK89052.1
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
    
 0.762
SHL53680.1
Carbonic anhydrase.
    
 0.762
SHM34315.1
Hypothetical protein.
       0.581
SHL79337.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.549
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
  0.498
SHM34377.1
3-oxoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.495
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
  0.479
SHL10134.1
UDPglucose--hexose-1-phosphate uridylyltransferase.
    
  0.471
Your Current Organism:
Chryseobacterium contaminans
NCBI taxonomy Id: 1423959
Other names: C. contaminans, CCM 8492, Chryseobacterium sp. C-26, LMG 27810, LMG:27810, strain C-26, strain C26
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