STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOT69199.1Sarcosine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)    
Predicted Functional Partners:
AOT72417.1
Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.977
AOT69200.1
Beta-aspartyl-peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.955
AOT69198.1
Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.930
AOT72415.1
Glycine/sarcosine/betaine reductase complex protein A; GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.861
AOT72418.1
Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.831
AOT72419.1
Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.831
AOT71440.1
Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.818
AOT72410.1
GrdX protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.818
AOT72413.1
Beta-aspartyl-peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.818
AOT72414.1
Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.798
Your Current Organism:
Geosporobacter ferrireducens
NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9
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