STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOT69494.12,3-diketo-L-gulonate reductase; NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family. (333 aa)    
Predicted Functional Partners:
AOT71076.1
Fumarate hydratase; Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.682
AOT71077.1
Fumarate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.673
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
    0.643
AOT69533.1
methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.532
AOT71568.1
Autoinducer-2 kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.527
AOT71314.1
Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.455
uxuA-2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
    0.430
AOT70004.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.427
AOT73305.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.410
Your Current Organism:
Geosporobacter ferrireducens
NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9
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