STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOT71493.1Uroporphyrinogen decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the uroporphyrinogen decarboxylase family. (383 aa)    
Predicted Functional Partners:
AOT70996.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.773
AOT71006.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
AOT70819.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.764
AOT71002.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.749
AOT71492.1
Cobalamin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.743
AOT70333.1
Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.733
AOT68686.1
Sodium:melibiose symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.719
AOT70823.1
Methyltetrahydrofolate--corrinoid methyltransferase; Catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.705
AOT69225.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.702
AOT70999.1
Methyltetrahydrofolate--corrinoid methyltransferase; Catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.700
Your Current Organism:
Geosporobacter ferrireducens
NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9
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