STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gferi_21275Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)    
Predicted Functional Partners:
AOT69211.1
CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.971
AOT73019.1
acetyl-CoA synthase subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.968
AOT71976.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.737
AOT71925.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.702
AOT71007.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.626
AOT69214.1
Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.613
AOT71577.1
Uroporphyrinogen decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.600
AOT70999.1
Methyltetrahydrofolate--corrinoid methyltransferase; Catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.588
AOT70823.1
Methyltetrahydrofolate--corrinoid methyltransferase; Catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.587
AOT69221.1
Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.582
Your Current Organism:
Geosporobacter ferrireducens
NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.