STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOT72283.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)    
Predicted Functional Partners:
AOT72285.1
Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.699
AOT73279.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.650
AOT72284.1
Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.614
AOT73280.1
Serine recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.575
AOT72275.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.521
AOT72277.1
Holin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.506
AOT72272.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.498
AOT72279.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.491
AOT72280.1
rRNA biogenesis protein rrp5; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.477
AOT72282.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.476
Your Current Organism:
Geosporobacter ferrireducens
NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.