STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM51308.1Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (178 aa)    
Predicted Functional Partners:
SDN37681.1
Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 
0.899
purB
Adenylosuccinate lyase.
       0.853
SDM60595.1
Glyoxylase, beta-lactamase superfamily II.
    
   0.841
trxA
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.633
SDO27519.1
Sugar transferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
 
 0.618
SDM51234.1
Hypothetical protein.
       0.609
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.607
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 
 0.592
SDM60558.1
Thioredoxin 1; Belongs to the thioredoxin family.
   
 
 0.585
SDN90654.1
Putative thioredoxin.
   
 
 0.585
Your Current Organism:
Cryobacterium flavum
NCBI taxonomy Id: 1424659
Other names: C. flavum, CGMCC 1.11215, Cryobacterium flavum Liu et al. 2012, Cryobacterium sp. Hh8, NBRC 107879, strain Hh8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.