STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER53903.1Fe-S cluster assembly ATP-binding protein. (257 aa)    
Predicted Functional Partners:
SER53926.1
Fe-S cluster assembly protein SufD.
 
 0.999
SER53942.1
Cysteine desulfurase /L-selenocysteine selenide-lyase (L-alanine-forming); Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 0.999
SER53978.1
Iron-regulated ABC transporter membrane component SufB.
 
 0.999
SER53960.1
Nitrogen fixation protein NifU.
 
  
 0.979
SER67799.1
Metal-sulfur cluster biosynthetic enzyme.
 
  
 0.769
SER53700.1
Transcriptional regulator, LacI family.
    
   0.515
SER59274.1
Transcriptional regulator, LacI family.
    
   0.515
SER76006.1
Transcriptional regulator, LacI family.
    
   0.515
SES09237.1
DNA-binding transcriptional regulator, LacI/PurR family.
    
   0.515
SER53889.1
Putative glutamine amidotransferase.
       0.490
Your Current Organism:
Isobaculum melis
NCBI taxonomy Id: 142588
Other names: CCUG 37660, DSM 13760, I. melis, Isobaculum melis Collins et al. 2002, strain M577-94
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.