STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER61256.1Two component transcriptional regulator, LytTR family. (242 aa)    
Predicted Functional Partners:
SER61228.1
Sensor histidine kinase YesM.
 
 
 0.991
SER61270.1
Hypothetical protein.
       0.693
SER61168.1
ABC-2 type transport system permease protein.
 
     0.551
proA
Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
    
   0.538
SER61195.1
ABC-2 type transport system ATP-binding protein.
       0.493
SER75588.1
Two-component system, CitB family, sensor histidine kinase MalK.
  
 
 0.491
sfsA
Sugar fermentation stimulation protein A; Belongs to the SfsA family.
    
   0.471
SES06456.1
LPXTG-motif cell wall anchor domain-containing protein.
  
     0.453
SER75611.1
Two-component system, CitB family, response regulator MalR.
     
 0.419
Your Current Organism:
Isobaculum melis
NCBI taxonomy Id: 142588
Other names: CCUG 37660, DSM 13760, I. melis, Isobaculum melis Collins et al. 2002, strain M577-94
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.