STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER63819.1Transcriptional antiterminator. (649 aa)    
Predicted Functional Partners:
SER63790.1
PTS system IIA component, Fru family.
 
 
 0.922
SER63774.1
PTS system IIB component, Fru family.
 
 
 0.860
SER63756.1
PTS system IIC component, Fru family.
 
 
 0.847
SES07288.1
PTS system IIC component, L-Asc family.
 
 
 0.834
SES07274.1
PTS system IIB component, L-Asc family.
 
 
 0.791
SER88849.1
Lichenan operon transcriptional antiterminator.
  
 
  0.646
SER63736.1
Tagatose-1,6-bisphosphate aldolase non-catalytic subunit AgaZ/GatZ.
 
    0.632
SER55060.1
PTS system IIA component, Fru family /PTS system IIB component, Fru family /PTS system IIC component, Fru family.
  
 
 0.595
SER82283.1
PTS system, mannose-specific IIC component.
  
 
 0.595
SER99328.1
PTS system, fructose subfamily, IIC component.
  
 
 0.595
Your Current Organism:
Isobaculum melis
NCBI taxonomy Id: 142588
Other names: CCUG 37660, DSM 13760, I. melis, Isobaculum melis Collins et al. 2002, strain M577-94
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.