node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SER68876.1 | SER78674.1 | SAMN04488559_103119 | SAMN04488559_10628 | SSU ribosomal protein S1P. | Ribosomal protein L7Ae. | 0.920 |
SER68876.1 | cshB | SAMN04488559_103119 | SAMN04488559_10529 | SSU ribosomal protein S1P. | ATP-dependent RNA helicase CshB; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | 0.919 |
SER68876.1 | fusA | SAMN04488559_103119 | SAMN04488559_10780 | SSU ribosomal protein S1P. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.917 |
SER68876.1 | pnp | SAMN04488559_103119 | SAMN04488559_105122 | SSU ribosomal protein S1P. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.693 |
SER68876.1 | rph | SAMN04488559_103119 | SAMN04488559_10476 | SSU ribosomal protein S1P. | Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family/ribonuclease PH,TIGR01966; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.967 |
SER68876.1 | rplC | SAMN04488559_103119 | SAMN04488559_10775 | SSU ribosomal protein S1P. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.994 |
SER68876.1 | rpsD | SAMN04488559_103119 | SAMN04488559_104121 | SSU ribosomal protein S1P. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
SER68876.1 | rpsE | SAMN04488559_103119 | SAMN04488559_10758 | SSU ribosomal protein S1P. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
SER68876.1 | rpsK | SAMN04488559_103119 | SAMN04488559_10750 | SSU ribosomal protein S1P. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
SER78674.1 | SER68876.1 | SAMN04488559_10628 | SAMN04488559_103119 | Ribosomal protein L7Ae. | SSU ribosomal protein S1P. | 0.920 |
SER78674.1 | cshB | SAMN04488559_10628 | SAMN04488559_10529 | Ribosomal protein L7Ae. | ATP-dependent RNA helicase CshB; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | 0.839 |
SER78674.1 | fusA | SAMN04488559_10628 | SAMN04488559_10780 | Ribosomal protein L7Ae. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.996 |
SER78674.1 | rph | SAMN04488559_10628 | SAMN04488559_10476 | Ribosomal protein L7Ae. | Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family/ribonuclease PH,TIGR01966; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.941 |
SER78674.1 | rplC | SAMN04488559_10628 | SAMN04488559_10775 | Ribosomal protein L7Ae. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
SER78674.1 | rpsD | SAMN04488559_10628 | SAMN04488559_104121 | Ribosomal protein L7Ae. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
SER78674.1 | rpsE | SAMN04488559_10628 | SAMN04488559_10758 | Ribosomal protein L7Ae. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
SER78674.1 | rpsK | SAMN04488559_10628 | SAMN04488559_10750 | Ribosomal protein L7Ae. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
SER78977.1 | cshB | SAMN04488559_10648 | SAMN04488559_10529 | Superfamily II DNA or RNA helicase, SNF2 family. | ATP-dependent RNA helicase CshB; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | 0.847 |
SER78977.1 | fusA | SAMN04488559_10648 | SAMN04488559_10780 | Superfamily II DNA or RNA helicase, SNF2 family. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.586 |
cshB | SER68876.1 | SAMN04488559_10529 | SAMN04488559_103119 | ATP-dependent RNA helicase CshB; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | SSU ribosomal protein S1P. | 0.919 |