STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER80276.14-carboxymuconolactone decarboxylase. (105 aa)    
Predicted Functional Partners:
SER91495.1
Cupin domain protein.
  
 0.951
SER49575.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.915
SER73702.1
Acetaldehyde dehydrogenase /alcohol dehydrogenase AdhE; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.817
SER80247.1
L-ascorbate metabolism protein UlaG, beta-lactamase superfamily.
       0.719
SER93321.1
3-hydroxyisobutyrate dehydrogenase.
  
 
 0.661
SER58917.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.565
SER80291.1
DNA-binding transcriptional regulator, MerR family.
       0.549
SER54833.1
AraC-type DNA-binding protein.
    
 0.540
SER63604.1
Acetate CoA/acetoacetate CoA-transferase beta subunit.
  
 
 0.539
SER63625.1
Acetate CoA/acetoacetate CoA-transferase alpha subunit.
  
 
 0.532
Your Current Organism:
Isobaculum melis
NCBI taxonomy Id: 142588
Other names: CCUG 37660, DSM 13760, I. melis, Isobaculum melis Collins et al. 2002, strain M577-94
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.