STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER86095.1Leader peptidase (prepilin peptidase) / N-methyltransferase. (232 aa)    
Predicted Functional Partners:
SER79426.1
Type IV pilus assembly protein PilB.
 
 
 0.850
SER79471.1
Type IV pilus assembly protein PilC.
 
  
 0.848
SES01401.1
Competence protein ComGB.
 
  
 0.847
SES01389.1
Competence protein ComGA.
 
 
 0.844
SER79454.1
Twitching motility protein PilT.
 
   
 0.815
SER76549.1
Competence protein ComEC.
 
  
 0.761
SER79506.1
Type IV pilus assembly protein PilA.
 
  
 0.632
SER77329.1
DNA processing protein.
  
  
 0.628
SER76519.1
Competence protein ComEA.
   
  
 0.605
SES01412.1
Type II secretion system protein C (GspC).
  
  
 0.565
Your Current Organism:
Isobaculum melis
NCBI taxonomy Id: 142588
Other names: CCUG 37660, DSM 13760, I. melis, Isobaculum melis Collins et al. 2002, strain M577-94
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.