STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER97130.1Helix-turn-helix domain-containing protein. (430 aa)    
Predicted Functional Partners:
cinA
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.717
SES06456.1
LPXTG-motif cell wall anchor domain-containing protein.
  
     0.632
SER49575.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.591
SER52032.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.525
SER59393.1
Carboxylesterase.
  
     0.505
lipL
octanoyl-[GcvH]:protein N-octanoyltransferase; Catalyzes the amidotransfer (transamidation) of the octanoyl moiety from octanoyl-GcvH to the lipoyl domain of the E2 subunit of lipoate-dependent enzymes; Belongs to the octanoyltransferase LipL family.
  
     0.486
SER63736.1
Tagatose-1,6-bisphosphate aldolase non-catalytic subunit AgaZ/GatZ.
  
     0.448
SER97141.1
Hypothetical protein.
       0.442
lacD
Tagatose 1,6-diphosphate aldolase; Belongs to the aldolase LacD family.
    
  0.429
SES02027.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Isobaculum melis
NCBI taxonomy Id: 142588
Other names: CCUG 37660, DSM 13760, I. melis, Isobaculum melis Collins et al. 2002, strain M577-94
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.