STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES00523.1Two-component signal transduction system YycFG, regulatory protein YycH. (440 aa)    
Predicted Functional Partners:
SES00508.1
Two-component signal transduction system YycFG, regulatory protein YycI.
 
  
 0.982
SES00540.1
PAS/PAC sensor signal transduction histidine kinase.
 
  
 0.880
SES00556.1
Two-component system, OmpR family, response regulator VicR.
  
  
 0.799
SER69157.1
Uncharacterized protein YpmB.
  
     0.758
SER71853.1
Rod shape-determining protein MreD.
  
     0.744
SES00487.1
Phosphoribosyl 1,2-cyclic phosphodiesterase.
  
  
 0.742
SER81191.1
Replicative DNA helicase loader DnaB.
  
     0.726
SER71999.1
Site-specific DNA-methyltransferase (adenine-specific).
  
     0.697
divIB
Cell division protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
  
   
 0.689
SER93817.1
Thioredoxin.
  
     0.688
Your Current Organism:
Isobaculum melis
NCBI taxonomy Id: 142588
Other names: CCUG 37660, DSM 13760, I. melis, Isobaculum melis Collins et al. 2002, strain M577-94
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.