STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALF11919.1Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)    
Predicted Functional Partners:
ALF11920.1
Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
  
   0.620
ALF11921.1
Alanine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AlaDH/PNT family.
  
    0.613
ALF11918.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.535
ALF09289.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.431
malL
Oligo-1,6-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.431
ALF09677.1
Oligo-1,6-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.431
ALF09762.1
Cyclomaltodextrinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.431
ALF09766.1
Alpha-amlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.431
ALF09925.1
Oligo-1,6-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.431
ALF10781.1
Trehalose-6-phosphate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.431
Your Current Organism:
Parageobacillus thermoglucosidasius
NCBI taxonomy Id: 1426
Other names: ATCC 43742, BGSC 95A1, Bacillus sp. BGSC W9A92, Bacillus thermoglucosidasius, CCUG 28887, CIP 106930, DSM 2542, Geobacillus thermoglucosidans, Geobacillus thermoglucosidasius, LMG 7137, LMG:7137, NBRC 107763, NCIMB 11955, NRRL B-14516, P. thermoglucosidasius, Parageobacillus thermoglucosidans, strain R-35637
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