STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ30358.1Trimethylamine---corrinoid protein Co-methyltransferase. (488 aa)    
Predicted Functional Partners:
SJZ30350.1
N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit.
 
     0.871
SJZ30361.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
  0.822
SJZ69171.1
N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit.
  
     0.731
SJZ41355.1
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
     0.641
SJZ38158.1
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
     0.626
SJZ59877.1
Vitamin B12 dependent methionine synthase, activation domain.
 
     0.602
SJZ30319.1
methylmalonyl-CoA mutase C-terminal domain-containing protein/methyltransferase cognate corrinoid proteins.
  
  0.600
SJZ69225.1
methylmalonyl-CoA mutase C-terminal domain-containing protein/methyltransferase cognate corrinoid proteins.
  
  0.594
SJZ70571.1
Methanogenic corrinoid protein MtbC1.
   
  0.482
SJZ30347.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
     0.478
Your Current Organism:
Selenihalanaerobacter shriftii
NCBI taxonomy Id: 142842
Other names: ATCC BAA-73, S. shriftii, Selenihalanaerobacter shriftii Switzer Blum et al. 2001, Selenohalobacter shriftii, strain DSSe-1
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