STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ36761.1Predicted D-glycerate permease. (444 aa)    
Predicted Functional Partners:
SJZ36730.1
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
  
 0.808
SJZ36678.1
Carbohydrate diacid regulator.
 
     0.499
SJZ40435.1
Kynurenine formamidase.
      0.450
SJZ40462.1
6-phosphogluconate dehydrogenase.
  
  
 0.446
SJZ91349.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
   
 0.434
SJZ94481.1
PTS system D-glucosamine-specific IIA component, Glc family (TC 4.A.1.1.6)/PTS system D-glucosamine-specific IIB component, Glc family (TC 4.A.1.1.6)/PTS system D-glucosamine-specific IIC component, Glc family (TC 4.A.1.1.6).
      
 0.420
SJZ36805.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
    0.418
hisI
phosphoribosyl-ATP pyrophosphatase; In the N-terminal section; belongs to the PRA-CH family.
      
 0.410
Your Current Organism:
Selenihalanaerobacter shriftii
NCBI taxonomy Id: 142842
Other names: ATCC BAA-73, S. shriftii, Selenihalanaerobacter shriftii Switzer Blum et al. 2001, Selenohalobacter shriftii, strain DSSe-1
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